PhAnToMe

PHage ANnotation TOols and MEthods

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1   Link   MLOGD: Programme for detecting overlapping coding sequences
MLOGD is a suite of software that detects new protein-coding sequences (CDSs) by analyzing the pattern of mutations across an input sequence alignment. In particular, the software can be used to detect new CDSs that overlap known CDSs in a different reading frame. Such CDSs are difficult to detect with standard gene-finding algorithms. The software is particularly useful for the analysis of virus genome alignments, where overlapping genes and ribosomal frameshifting sites are common. 		317
2   Link   VOCS: Viral Orthologous Clusters
Viral Orthologous Clusters (VOCs) is an easy-to-use Java GUI used to access the VBRC genome databases. 		415
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