PhAnToMe

PHage ANnotation TOols and MEthods

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Virus Databases
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# Web Link Hits
1   Link   VBRC: Viral Bioinformatics Resource Center
VBRC is one of eight bioinformatics resource centers (BRCs) that have been funded by NIH/NIAID from 2004-2009 to support research conducted on different microbes (eukaryotic, bacterial, archaeal, and viral).
VBRC provides access to viral genomes and a variety of bioinformatics tools for comparative genomic analyses. It mostly covers viruses that infect humans.
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2   Link   HPV Sequence Database
The Human Papillomaviruses Database (HPV) collects, curates, analyzes, and publishes genetic sequences of papillomaviruses and related cellular proteins. THe HPV database is maintained by a group of molecular biologists, sequence analysts, computer technicians, post-docs and graduate research assistants located at Los Alamos National Laboratory in the Theoretical Biology and Biophysics Group.
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3   Link   ICTVdB: The Universal Virus Database of the International Committee on Taxonomy of Viruses
The ICTVdB is a dynamic database containing information about viruses of animals, . plants, bacteria, and fungi. Though initially designed for taxonomic (or classification) research, the ICTVdB has evolved to become a major reference resource and research tool.

The database is authorized by the ICTV, an international assembly of experts that rules on names and relationships of all viruses.
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4   Link   Viral Zone
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5   Link   ViperDB
VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration. In addition, all virus capsids are placed in a single icosahedral orientation convention, facilitating comparison between different structures. The web site includes powerful search utilities , links to other relevant databases, background information on virus capsid structure, and useful database interface tools
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6   Link   Virus Ultrastructure Images
A database of virus ultrastructure electron micrograph images taken by Linda Stannard
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