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1 |
NCBI Phage Genomes
NCBI's RefSeq phage genomes list covers the phages from GenBank that have been included in RefSeq, links to the genbank records and publications.
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1089 |
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2 |
EBI Phage Database
The European Bioinformatics Institute's list of phage genomes
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640 |
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3 |
ACLAME: A CLAssification of Mobile genetic Elements
ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons. In addition to provide information on the full genomes and genetic entities, it aims at building a comprehensive classification of the functional modules of MGE's at the protein, gene, and higher levels.
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468 |
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4 |
megx: Marine ecological genomics marine virus database
Megx.net allows access to integrated environmental and (meta)genomic data intended for use in marine microbial ecology.
This section of Megx.net lists marine phage genomes.
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379 |
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5 |
phiSITE
phiSITE database is a free database service provided by the Institute of Molecular Biology, Slovak Academy of Sciences. phiSITE is a collection of phage gene regulatory elements and other related information. The data are collected mainly form scientific papers and cross-referenced with other database resources. To date it contains more than 700 reglatory elements from 32 bacteriophages form Siphoviridae, Myoviridae and Podoviridae families, with particular focus on experimentally confirmed regulatory sites. phiSITE database is permanently updated and new releases are published several times a year
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370 |
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6 |
Mycobacteriophage Database
This site is an interactive database that collects and shares data associated with the discovery, sequencing, and characterization of mycobacteriophages
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590 |
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7 |
Prophage database
Bacterial genome sequencing and progress in genomic research over the last decade has revealed the high incidence of prophage elements in bacterial genomes. Prophages contribute 10 - 20 % of bacterial genome and account for substantial inter-strain genetic variability in several bacterial species. These elements are defective and cannot form infective particles but have also been implicated in providing fitness factors. Prophage database (either in India or Israel) is a comprehensive database for prophage elements and phage remnants. The first version contains a total of 226 prophage entries covering a total of 6,628 proteins. Genome level data briefs on details of prophage location, genome size, GC content, taxonomy, and functionality of the prophages. Protein level data details possible functional and domain annotation, whether the protein is likely to be disordered and other details, which are useful as selection criteria for structural genomics initiatives. This work emphasizes the need to extend the efforts to detect and annotate prophage elements in genomes sequences. This provides a step towards the development of effective and systematic support for prophage data management and enables this to serve as a platform for prophage detection and target selection for structural genomics.
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404 |
PhiLinks
