These downloads are from the Phantome database. Most are generated automatically, please contact Rob Edwards or one of the other phantomers if they appear out of date and you would like more recent files.
The proteins directory contains just the protein sequences, and there are two options - the all_sequences directory contains a single file with all the data, while the by_genome directory contains one file per genome.
PhAnToMe is a NSF-funded collaborative project of research centers at San Diego State University, University of South Florida, University of Arizona, and University of Virginia. This work is funded by NSF grant DBI: 0850356 from the Division of Biological Infrastructure.
Please contact Rob Edwards if you would like more data, more descriptions, or more formats.